Information for 10-AGCTGGCAGA (Motif 10)

G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
Reverse Opposite:
A G C T A G T C C G A T C T A G A G T C G T A C G T C A A C T G A T G C C A G T
p-value:1e-11
log p-value:-2.709e+01
Information Content per bp:1.827
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif334.7
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets55.5 +/- 26.5bp
Average Position of motif in Background50.7 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGCTGGCAGA
-CTTGGCAA-
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCTGGCAGA
GGTTGGCAT-
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCTGGCAGA
ARNTGACA--
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGCTGGCAGA---
AGGTGNCAGACAG
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A A C G T A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGCTGGCAGA--
AGGTGHCAGACA
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCTGGCAGA
TNNGGGCAG-
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGCTGGCAGA
--TTGGCA--
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGCTGGCAGA
-NTTGGCANN
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCTGGCAGA-
-VBTGWCAGCB
 G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGCTGGCAGA---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T G T C A T A C G G T A C A C G T A C T G T C A G A G T C C G T A A C T G T C G A A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C