Information for 5-GTAATTAAAT (Motif 9)

A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T
Reverse Opposite:
G C T A C G A T A C G T C A G T G T C A G C T A G A C T G C A T C G T A T A G C
p-value:1e-11
log p-value:-2.598e+01
Information Content per bp:1.563
Number of Target Sequences with motif182.0
Percentage of Target Sequences with motif21.09%
Number of Background Sequences with motif6006.5
Percentage of Background Sequences with motif12.72%
Average Position of motif in Targets47.0 +/- 27.5bp
Average Position of motif in Background49.6 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROP1/MA0715.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GTAATTAAAT--
-TAATTAAATTA
 A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PH0095.1_Lhx5/Jaspar

Match Rank:2
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----GTAATTAAAT---
CGAATTAATTAAATACT
 A C G T A C G T A C G T A C G T A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T A C G T
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GTAATTAAAT--
-TAATTAAATTA
 A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GTAATTAAAT
YTAATTAVHT
 A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GTAATTAAAT
GCAATAAAAA
 A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0120.1_Nkx6-3/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GTAATTAAAT---
CNNANTAATTAATTNNC
 A C G T A C G T A C G T A C G T A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0093.1_Lhx3/Jaspar

Match Rank:7
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GTAATTAAAT---
GAAATTAATTAAATAAT
 A C G T A C G T A C G T A C G T A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

MNX1/MA0707.1/Jaspar

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAAAT
GGTAATTAAA-
 A C G T A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T
C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:9
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GTAATTAAAT--
-TAATTAAATTA
 A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T
A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PH0101.1_Lmx1b/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GTAATTAAAT---
NNAATTAATTAAAAANN
 A C G T A C G T A C G T A C G T A C T G G C A T C G T A C T G A C G A T C A G T G T C A T G C A G C T A C G A T A C G T A C G T A C G T
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T