Information for 11-CGGAAACTGCAGG (Motif 12)

G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
Reverse Opposite:
A G T C A G T C C G A T A C T G A G T C C G T A A C T G G C A T A C G T G A C T A G T C G T A C C T A G
p-value:1e-10
log p-value:-2.394e+01
Information Content per bp:1.737
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif124.3
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets59.4 +/- 24.7bp
Average Position of motif in Background49.3 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:CGGAAACTGCAGG---
----CACAGCAGGGGG
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CGGAAACTGCAGG-----
---DCHCAGCAGGRGGCC
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CGGAAACTGCAGG
---NAACAGCTGG
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
A C G T A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CGGAAACTGCAGG
---DCTCAGCAGG
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGAAACTGCAGG---
-GAGCACAGCAGGACA
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CGGAAACTGCAGG
----AACAGCTG-
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CGGAAACTGCAGG
----ANCAGCTG-
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGGAAACTGCAGG---
-CCACACAGCAGGAGA
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CGGAAACTGCAGG
---NAHCAGCTGD
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G
A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

Myod1/MA0499.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGAAACTGCAGG-
-NGNGACAGCTGCN
 G A T C A C T G C T A G C T G A G T C A C G T A A G T C G C A T A C T G A G T C G C T A A C T G C T A G A C G T
A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A