Information for 2-CAGRCAGCGAGCAAAG (Motif 4)

A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
Reverse Opposite:
A T G C A C G T A G C T C A G T A C T G A G T C A C G T A G T C A T C G A G T C C G A T A C T G A G C T G T A C A G C T A C T G
p-value:1e-16
log p-value:-3.736e+01
Information Content per bp:1.780
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 17.9bp
Average Position of motif in Background25.4 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGRCAGCGAGCAAAG
-TGGCACCATGCCAA-
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CAGRCAGCGAGCAAAG
TTGGCANNNTGCCAAG
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CAGRCAGCGAGCAAAG
------CGGAGC----
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CAGRCAGCGAGCAAAG
CTGGCAGNCTGCCA--
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:5
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CAGRCAGCGAGCAAAG-
------NNGAGATAAGA
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:CAGRCAGCGAGCAAAG--
--------NAGATAAGNN
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.49
Offset:8
Orientation:forward strand
Alignment:CAGRCAGCGAGCAAAG
--------CAGCC---
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.49
Offset:8
Orientation:forward strand
Alignment:CAGRCAGCGAGCAAAG--
--------CAGATAAGGN
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGRCAGCGAGCAAAG
CCAGACAG---------
 A C G T A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:10
Score:0.49
Offset:9
Orientation:forward strand
Alignment:CAGRCAGCGAGCAAAG-
---------AGATAAGA
 A G T C C T G A A C T G C T G A G T A C C G T A C T A G A T G C A C T G C G T A A C T G G T A C G T C A C T G A C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A