Information for 11-TAGAGACAGA (Motif 13)

C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
Reverse Opposite:
A G C T A T G C A G C T A C T G A C G T A G T C A G C T A G T C A C G T G C T A
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.851
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif139.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets42.5 +/- 26.4bp
Average Position of motif in Background49.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TAGAGACAGA
GGTTAGAGACCT-
 A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TAGAGACAGA--
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TAGAGACAGA
GAAAGTGAAAGT
 A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TAGAGACAGA--
AGGTGHCAGACA
 C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TAGAGACAGA
-CCAGACAG-
 C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TAGAGACAGA---
AAACAGACAAAGGAAT
 A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TAGAGACAGA--
--GAGSCCGAGC
 C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A A C G T A C G T
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TAGAGACAGA--
AGAAAGTGAAAGTGA
 A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A A C G T A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TAGAGACAGA
SCCTAGCAACAG-
 A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TAGAGACAGA
GRTGMTRGAGCC---
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G C T G A A C T G G T C A G T A C C T G A T A C G C T G A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T