Information for 5-CAGGGAGCCAGGA (Motif 9)

T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
Reverse Opposite:
C A G T A G T C A G T C A G C T A T C G A T C G T A G C G A C T A G T C T G A C G T A C C G A T A T C G
p-value:1e-12
log p-value:-2.935e+01
Information Content per bp:1.673
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif706.8
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets44.0 +/- 25.2bp
Average Position of motif in Background49.2 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGAGCCAGGA-
SCAGYCADGCATGAC
 A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGAGCCAGGA
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGGAGCCAGGA
ACAGGAAGTG----
 A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGGGAGCCAGGA---
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CAGGGAGCCAGGA
TTGGCANNNTGCCAAG-
 A C G T A C G T A C G T A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGGGAGCCAGGA
AACAGGAAGT-----
 A C G T A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGGGAGCCAGGA--
GCAGCCAAGCGTGACN
 A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAGGGAGCCAGGA
---CGTGCCAAG-
 T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAGGGAGCCAGGA
ACAGGAAGTG----
 A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CAGGGAGCCAGGA
TGGCACCATGCCAA--
 A C G T A C G T A C G T T A G C C G T A C A T G A C T G T C A G C T G A A T C G T A G C T A G C C T G A C T A G C T A G G T C A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T