Information for 3-GTTGCCAAAA (Motif 4)

A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
Reverse Opposite:
G C A T A G C T A G C T A C G T A C T G T A C G T G A C G T C A C T G A T G A C
p-value:1e-30
log p-value:-6.908e+01
Information Content per bp:1.538
Number of Target Sequences with motif256.0
Percentage of Target Sequences with motif30.12%
Number of Background Sequences with motif6961.0
Percentage of Background Sequences with motif14.62%
Average Position of motif in Targets53.0 +/- 24.7bp
Average Position of motif in Background49.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GTTGCCAAAA
GGTGCCAAGT
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GTTGCCAAAA
-TTGCCAAG-
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GTTGCCAAAA
CGTGCCAAG-
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:GTTGCCAAAA
--TGCCAA--
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCAAAA---
CAATTGCAAAAATAT
 A C G T A C G T A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTTGCCAAAA--------
--TGCCAAAATAAACANN
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTTGCCAAAA
-ATGCCAACC
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAAAA
RHTGWCAR--
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAAAA
ARNTGACA---
 A C G T A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTGCCAAAA
-CTGCCCGCA
 A C T G G A C T C A G T A C T G A T G C G T A C T G C A T C G A T C G A C G T A
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A