Information for 1-NBYTGGCHNNNDGCCA (Motif 2)

A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
Reverse Opposite:
C A G T A C T G A T C G T G A C G C A T G T C A A G T C A C G T C A G T A C T G G A T C A G T C G T C A C T G A T C G A T C G A
p-value:1e-111
log p-value:-2.564e+02
Information Content per bp:1.569
Number of Target Sequences with motif172.0
Percentage of Target Sequences with motif20.24%
Number of Background Sequences with motif985.3
Percentage of Background Sequences with motif2.07%
Average Position of motif in Targets51.4 +/- 20.8bp
Average Position of motif in Background50.9 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:NBYTGGCHNNNDGCCA-
-CTTGGCANNNTGCCAA
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.91
Offset:2
Orientation:forward strand
Alignment:NBYTGGCHNNNDGCCA
--CTGGCAGNCTGCCA
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
--TTGGCATGGTGCCA
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:NBYTGGCHNNNDGCCA
--TTGGCA--------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
-NTTGGCANN------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
NNTTGGCANN------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
-CTTGGCAA-------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-NBYTGGCHNNNDGCCA
CAKCTGKYCYYTTYCCC
 A C G T A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
GGTTGGCAT-------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:NBYTGGCHNNNDGCCA
TNNGGGCAG-------
 A G C T A G C T G A C T C A G T A C T G C T A G G T A C G T C A T G C A T C A G C A G T C G T A A C T G A T G C A G T C G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T