Information for 11-CTGTTGCTAG (Motif 19)

A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A G T C C G T A C G T A A G T C C G T A A C T G
p-value:1e-5
log p-value:-1.380e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 10.0bp
Average Position of motif in Background38.4 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CTGTTGCTAG--
CTGTTGCTAGGS
 A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCTAG----
NCCGTTGCTANGNGN
 A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CTGTTGCTAG--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCTAG----
NNCGTTGCTATGGNN
 A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTGTTGCTAG------
-KGTTGCTAGGMAACA
 A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

SCRT2/MA0744.1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CTGTTGCTAG
CCACCTGTTGCAT-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGTTGCTAG
NATGTTGCAA-
 A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CTGTTGCTAG
ANCCACCTGTTGCNC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCTAG-
GCTATTTATAGC
 A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MEF2D/MA0773.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCTAG-
TCTATTTATAGN
 A C G T A G T C A C G T A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A C G T
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T