Information for 7-CTTGGCAGACAGC (Motif 10)

A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
Reverse Opposite:
A C T G G T A C A C G T T A C G A C G T A G T C C A G T A C T G A G T C G A T C T C G A G T C A A C T G
p-value:1e-12
log p-value:-2.794e+01
Information Content per bp:1.809
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets33.1 +/- 12.2bp
Average Position of motif in Background55.5 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTTGGCAGACAGC-
----CCAGACRSVB
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTTGGCAGACAGC
----CCAGACAG-
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTGGCAGACAGC---
CTTGGCANNNTGCCAA
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C A C G T A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGACAGC--
-CTGGCAGNCTGCCA
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C A C G T A C G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGACAGC
NNTTGGCANN----
 A C G T A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGACAGC
CTTGGCAA-----
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGACAGC
-TTGGCA------
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGACAGC--
-TTTGCACACGGCAC
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C A C G T A C G T
A C G T C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGACAGC
NTTGGCANN----
 A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTTGGCAGACAGC
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T C T A G A C T G G T A C G T C A A C T G C G T A A T G C G T C A A C T G A G T C
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A