Information for 5-CTGTTTTTAATTM (Motif 5)

T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A
Reverse Opposite:
C A G T C T G A C T G A A G C T A G C T T C G A T C G A T G C A G C T A T G C A G T A C G C T A A C T G
p-value:1e-17
log p-value:-3.978e+01
Information Content per bp:1.643
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.73%
Number of Background Sequences with motif416.3
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets44.4 +/- 27.1bp
Average Position of motif in Background48.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0100.1_Lmx1a/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGTTTTTAATTM-----
-NNTTTTTAATTAATTCG
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G

PH0101.1_Lmx1b/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGTTTTTAATTM-----
-AGTTTTTAATTAATTTG
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0091.1_Lhx1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTGTTTTTAATTM-----
-NNTTATTAATTAATNCN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CTGTTTTTAATTM
-----TTTAAT--
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:5
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CTGTTTTTAATTM-
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGTTTTTAATTM--
NTNTTGTTGTTTGTN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

FOXP1/MA0481.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTGTTTTTAATTM--
CTTTGTTTACTTTTN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T
A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G

PH0095.1_Lhx5/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGTTTTTAATTM-----
-ANNATTTAATTAATTNN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGTTTTTAATTM-----
-NNNTTTTAATTAANNNN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

MNX1/MA0707.1/Jaspar

Match Rank:10
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CTGTTTTTAATTM--
-----TTTAATTANN
 T G A C C A G T A C T G A C G T C G A T A C G T A G C T A G C T T C G A T C G A A G C T G A C T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C