Information for 14-CTTCWGACTAATT (Motif 23)

A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T
Reverse Opposite:
T G C A C G T A A C G T C G A T C G T A A C T G C G A T A G T C C G T A A C T G C G T A C G T A A C T G
p-value:1e-8
log p-value:-1.910e+01
Information Content per bp:1.696
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 29.3bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTTCWGACTAATT------
--GAAGACCAATTAGCGCT
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0132.1_Pax6/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTTCWGACTAATT-------
----TGATTAATTAATTGAC
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTTCWGACTAATT--
ACCGTGACTAATTNN
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTTCWGACTAATT---
----TGATTRATGGCY
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PDX1/MA0132.2/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CTTCWGACTAATT--
-------CTAATTAN
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTTCWGACTAATT
RTCATGTGAC-----
 A C G T A C G T A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTTCWGACTAATT
--TGTGACTCATT
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T
A C G T A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTTCWGACTAATT-
----TGATTGATGA
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTTCWGACTAATT-
--DATGASTCATNN
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T
A C G T A C G T C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CTTCWGACTAATT---
------ACTAATTAAC
 A G T C G C A T C G A T T G A C C G A T A C T G G C T A G T A C G A C T C G T A G T C A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C