Information for 7-AGTCTGAAGCATGGCT (Motif 13)

C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
Reverse Opposite:
C G T A A T C G A G T C A G T C C G T A A C G T A T C G G T A C A G C T A C G T A G T C C G T A A C T G C G T A A T G C A G C T
p-value:1e-11
log p-value:-2.632e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.8 +/- 14.6bp
Average Position of motif in Background42.1 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOS/MA0476.1/Jaspar

Match Rank:1
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGTCTGAAGCATGGCT
--TGTGACTCATT---
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGTCTGAAGCATGGCT
----TGATTRATGGCY
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGTCTGAAGCATGGCT
----NGAAGC------
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGTCTGAAGCATGGCT
------AAGCTTG---
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGTCTGAAGCATGGCT-
---NNGTCGCGTGNCAC
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T A C G T
A C G T A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGTCTGAAGCATGGCT--
---GTCATGCHTGRCTGS
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGTCTGAAGCATGGCT
---ATGATKGATGRC-
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

Pax6/MA0069.1/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGTCTGAAGCATGGCT-
---TTCACGCATGAGTT
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

JUND/MA0491.1/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AGTCTGAAGCATGGCT
--GGTGACTCATC---
 C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A C G T A C G T C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGAAGCATGGCT
TWGTCTGV---------
 A C G T C T G A A T C G C G A T A G T C A C G T A C T G C G T A C T G A A C T G A T G C G T C A A C G T A C T G C T A G A T G C A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T