Information for 16-CCATGGGAAT (Motif 21)

A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T G T A C A G T C G T A C C G T A A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.094e+01
Information Content per bp:1.924
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif29.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets53.0 +/- 20.8bp
Average Position of motif in Background55.7 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1/MA0154.3/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CCATGGGAAT
ANTCCCTNGGGAAT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCATGGGAAT-
-CSTGGGAAAD
 A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T A C G T
A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGGAAT
GGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGGAAT
NGTTGCCATGGCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCATGGGAAT---
-TATGCWAATBAV
 A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCATGGGAAT
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGGAAT
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGGAAT-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGGAAT-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGGAAT-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G A T A C T G A C T G A C T G C G T A C G T A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G