Information for 9-AGCCCAGAGA (Motif 12)

C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
Reverse Opposite:
A C G T T A G C C G A T A G T C C G A T A C T G T C A G C T A G G T A C C G A T
p-value:1e-9
log p-value:-2.298e+01
Information Content per bp:1.760
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.42%
Number of Background Sequences with motif582.4
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets51.9 +/- 29.5bp
Average Position of motif in Background51.7 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGCCCAGAGA
TGCCCAGNHW
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGCCCAGAGA-----
CAAATCCAGACATCACA
 A C G T A C G T C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCCCAGAGA
ATGCCAGACN
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AGCCCAGAGA-
---CCAGACAG
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AGCCCAGAGA---
---CCAGACRSVB
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGCCCAGAGA-
---BCAGACWA
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGCCCAGAGA
TGACANARRCCAGRC-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGCCCAGAGA
CAGCC------
 A C G T C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCCCAGAGA
CGTCTAGACA
 C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGCCCAGAGA
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A A C T G G A T C A G T C A G T C C G T A A C T G C G T A A T C G G T C A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T