Information for 5-RAGGAAAWSCCAMWKC (Motif 11)

C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
Reverse Opposite:
A C T G G T A C G C A T A C G T A C G T A C T G A C T G T A C G C G T A A C G T C G A T A C G T G T A C A G T C A C G T G A C T
p-value:1e-10
log p-value:-2.490e+01
Information Content per bp:1.833
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 18.2bp
Average Position of motif in Background58.0 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:RAGGAAAWSCCAMWKC
--GGAAANCCCC----
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:RAGGAAAWSCCAMWKC
--GGAAATTCCC----
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RAGGAAAWSCCAMWKC
--GGAAATCCCC----
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:RAGGAAAWSCCAMWKC
--GGAAATTCCC----
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RAGGAAAWSCCAMWKC
-GGGAAATCCCCN---
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--RAGGAAAWSCCAMWKC
NACAGGAAAT--------
 A C G T A C G T C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--RAGGAAAWSCCAMWKC
NDCAGGAARTNN------
 A C G T A C G T C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RAGGAAAWSCCAMWKC
-TGGAAAA--------
 C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RAGGAAAWSCCAMWKC
AVCAGGAAGT--------
 A C G T A C G T C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RAGGAAAWSCCAMWKC
NNTGGAAANN-------
 A C G T C T G A C G T A A C T G A C T G C G T A C G T A C G T A C G A T A T C G A G T C A G T C C G T A T G C A C G A T A C T G A G T C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T