Information for 5-CAGDCTSCTGAGGTCA (Motif 13)

A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
Reverse Opposite:
C A G T C T A G C T G A A G T C A T G C A C G T A G T C C G T A A T C G A T C G G C T A A C T G G A C T A G T C A C G T A T C G
p-value:1e-7
log p-value:-1.756e+01
Information Content per bp:1.742
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.2 +/- 10.1bp
Average Position of motif in Background53.9 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.70
Offset:8
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA
--------TRAGGTCA
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA
-GGTCANYTGAGGWCA
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

CREB1/MA0018.2/Jaspar

Match Rank:3
Score:0.66
Offset:8
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA
--------TGACGTCA
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA-
-----NRRTGACGTCAT
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.64
Offset:8
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA
--------AGRGGTCA
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:CAGDCTSCTGAGGTCA---
-------RTGACGTCAYCN
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C T G C G T A A G T C T C A G G A C T T G A C C T G A A G C T G A T C A T C G

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.62
Offset:9
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA-
---------AAGGTCAC
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA
------GATGACGTCA
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CAGDCTSCTGAGGTCA----
-------CAAAGGTCAAGGG
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGDCTSCTGAGGTCA-
-----NGATGACGTCAT
 A T G C C G T A A C T G C T G A G T A C C G A T A T G C T A G C C G A T C T A G C G T A T A C G A C T G G A C T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T