Information for 5-GTCAGCAGGTGGCGCT (Motif 4)

A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G G T A C A C T G A G T C A G T C G T C A G A T C A G T C A G C T A C T G A G T C A G C T A C T G C T G A A G T C
p-value:1e-16
log p-value:-3.701e+01
Information Content per bp:1.920
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 25.1bp
Average Position of motif in Background28.4 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTCAGCAGGTGGCGCT----
GCCASCAGGGGGCGCYVNNG
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GTCAGCAGGTGGCGCT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGCAGGTGGCGCT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTCAGCAGGTGGCGCT
--SDGCAGGTGCNS--
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGCAGGTGGCGCT
DCHCAGCAGGRGGCC--
 A C G T A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCAGCAGGTGGCGCT
CACAGCAGGGGG----
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GTCAGCAGGTGGCGCT
---AACAGATGGC---
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTCAGCAGGTGGCGCT
---NNCAGGTGNN---
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGCAGGTGGCGCT
TGAGTCAGCA---------
 A C G T A C G T A C G T A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTCAGCAGGTGGCGCT
---AACAGGTGT----
 A C T G G A C T A G T C C T G A A C T G A G T C C T G A A C T G C T A G A C G T A C T G A C T G G T A C A C T G A G T C A G C T
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T