Information for 12-TTGGCMWGRCTCC (Motif 20)

A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C T A G A G C T A G T C C G A T A C T G A C T G A G T C A G T C C G T A G T C A
p-value:1e-7
log p-value:-1.818e+01
Information Content per bp:1.886
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 15.2bp
Average Position of motif in Background53.7 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCMWGRCTCC
NTTGGCANN-----
 A C G T A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGGCMWGRCTCC
TTGGCA-------
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTGGCMWGRCTCC-
TTGGCATGGTGCCA
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCMWGRCTCC
NNTTGGCANN-----
 A C G T A C G T A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTGGCMWGRCTCC------
--TACGAGACTCCTCTAAC
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGGCMWGRCTCC---
TTGGCANNNTGCCAAG
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCMWGRCTCC
CTTGGCAA------
 A C G T A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGGCMWGRCTCC-
CTGGCAGNCTGCCA
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCMWGRCTCC
GGTTGGCAT------
 A C G T A C G T A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.56
Offset:8
Orientation:forward strand
Alignment:TTGGCMWGRCTCC-
--------GCTCCG
 A C G T C G A T A C T G A C T G A G T C G T A C C G T A A C T G T C A G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G