Information for 5-CAATAAATCT (Motif 5)

G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
Reverse Opposite:
C G T A A C T G C G T A A C G T A G C T A C G T G T C A A C G T A C G T C T A G
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.853
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif30.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.2 +/- 25.9bp
Average Position of motif in Background63.4 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CAATAAATCT-
GGCCATAAATCAC
 A C G T A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CAATAAATCT
GGCCATAAATCA
 A C G T A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CAATAAATCT
GGCCATAAATCA
 A C G T A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CAATAAATCT
CCAATAAAAC-
 A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CAATAAATCT
GCCATAAATCA
 A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CAATAAATCT
CCAATAAAAA-
 A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CAATAAATCT
GCAATAAAA--
 A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CAATAAATCT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CAATAAATCT
NGYCATAAAWCH
 A C G T A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CAATAAATCT
CCAATAAAAA-
 A C G T G A T C G T C A C G T A A C G T C G T A C T G A C G T A G A C T A G T C C G A T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T