Information for 5-GMTGGCASCAGRG (Motif 3)

A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
Reverse Opposite:
A G T C G A T C A G T C C G A T A C T G A T G C G A C T A C T G T A G C A G T C G T C A A C T G A T G C
p-value:1e-12
log p-value:-2.808e+01
Information Content per bp:1.753
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif50.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets45.1 +/- 25.6bp
Average Position of motif in Background56.4 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GMTGGCASCAGRG
SCTGTCARCACC-
 A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GMTGGCASCAGRG
GGTTGGCAT-----
 A C G T A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GMTGGCASCAGRG
NTTGGCANN----
 A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GMTGGCASCAGRG
CAAGATGGCGGC----
 A C G T A C G T A C G T A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GMTGGCASCAGRG
VGCTGWCAVB----
 A C G T A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GMTGGCASCAGRG
CTTGGCAA-----
 A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GMTGGCASCAGRG
-TTGGCA------
 A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GMTGGCASCAGRG
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GMTGGCASCAGRG
CAAGATGGCGGC----
 A C G T A C G T A C G T A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GMTGGCASCAGRG--
---CACAGCAGGGGG
 A T C G T G A C C A G T A C T G A C T G G T A C C T G A A T C G A G T C C G T A C T A G C T A G C T A G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G