Information for 6-AGGACAGTAG (Motif 7)

C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
Reverse Opposite:
A G T C A G C T C T G A A G T C A C G T A T C G C G A T A T G C A G T C C G A T
p-value:1e-10
log p-value:-2.355e+01
Information Content per bp:1.851
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.30%
Number of Background Sequences with motif162.1
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets57.8 +/- 26.4bp
Average Position of motif in Background48.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG-----
ATGTACAGTAGCAAAG
 A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG-----
ATTTACAGTAGCAAAA
 A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGTAG
TRAGGTCA----
 A C G T A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTAG
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTAG
CCAGGAACAG---
 A C G T A C G T A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGACAGTAG
AGGTCA----
 C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTAG
AAGGTCAC---
 A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGACAGTAG
--CACAGN--
 C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTAG
CAAAGGTCAAGGG
 A C G T A C G T A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGGACAGTAG
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C G T A A C T G T A C G C G T A A T G C C G T A A C T G G A C T C T G A C T A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T