Information for 6-GATGTCTGCC (Motif 8)

A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
Reverse Opposite:
C A T G A C T G G T A C G T C A T C A G G T C A A G T C C G T A A C G T A T G C
p-value:1e-12
log p-value:-2.840e+01
Information Content per bp:1.856
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif67.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets52.6 +/- 20.5bp
Average Position of motif in Background50.0 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GATGTCTGCC
VBSYGTCTGG-
 A C G T A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GATGTCTGCC
-TWGTCTGV-
 A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GATGTCTGCC
-CTGTCTGG-
 A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GATGTCTGCC----
--TGTCTGDCACCT
 A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GATGTCTGCC----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GATGTCTGCC----
-CTGTCTGTCACCT
 A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GATGTCTGCC
CAAGATGGCGGC-
 A C G T A C G T A C G T A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GATGTCTGCC
CAAGATGGCGGC-
 A C G T A C G T A C G T A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GATGTCTGCC--
TGGCAGNCTGCCAG
 A C G T A C G T A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C A C G T A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GATGTCTGCC----
-----CTGCCCGCA
 A T C G G T C A A C G T A C T G A C G T A G T C C A G T A C T G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A