Information for 5-CGCCATGGTGATTTTC (Motif 7)

A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G T C G A G T C A C G T A C G T A C G A T A G T C C G T A G T A C G T A C C G T A A C G T A C T G A C T G A G T C C T A G
p-value:1e-13
log p-value:-3.051e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.7 +/- 17.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATGGTGATTTTC
GCNGCCATCTTG------
 A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATGGTGATTTTC
GCCGCCATCTTG------
 A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCCATGGTGATTTTC
GTCCGCCATTA--------
 A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGCCATGGTGATTTTC
-----CNGTGATTTN-
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGCCATGGTGATTTTC
NGTTGCCATGGCAA-----
 A C G T A C G T A C G T A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGCCATGGTGATTTTC-
---NTTATTGATTTTTT
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C A C G T
A C G T A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CGCCATGGTGATTTTC
--CCTTTGTT------
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CGCCATGGTGATTTTC----
---TNNNATGATTTCNNCNN
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CGCCATGGTGATTTTC-
-----NGGGGATTTCCC
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CGCCATGGTGATTTTC
--CCATTGTTYB----
 A G T C A C T G A G T C A G T C C G T A A C G T C A T G A C T G A C G T A C T G C G T A C G A T A C G T A C G T A C G T A G T C
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T