Information for 3-YYTAATTGGAAACAGM (Motif 5)

A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
Reverse Opposite:
A C T G G A T C A C G T A C T G A C G T A C G T A G C T A G T C A G T C G T C A G T C A A C G T A C G T C G T A C T G A C T A G
p-value:1e-16
log p-value:-3.698e+01
Information Content per bp:1.755
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.2 +/- 18.9bp
Average Position of motif in Background72.5 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ALX3/MA0634.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
NNTAATTAGA------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YYTAATTGGAAACAGM---
-YTAATTRAWWCCAGATGT
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C A C G T A C G T A C G T
A C G T G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

ISX/MA0654.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTAG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C G A T G T C A C G T A C A G T C A G T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Shox2/MA0720.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTAG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C G A T G T C A C G T A C A G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
NNTAATTGGN------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

RAX2/MA0717.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTGG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C G A T T C G A C T G A C A G T A G C T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:YYTAATTGGAAACAGM
-TTAATTGG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T G A C T G C A T T C G A C T G A A C G T C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTGG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTGG-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Prrx2/MA0075.2/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YYTAATTGGAAACAGM
-NTAATTGN-------
 A G T C A G C T A C G T C G T A C G T A A C G T A C G T C T A G C T A G C T G A C G T A G T C A A G T C C G T A C A T G T G A C
A C G T A G C T C G A T C T G A C T G A A C G T A G C T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T