Information for 5-GGCAGWCWGCCAG (Motif 8)

C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
Reverse Opposite:
A G T C A C G T A C T G C T A G G T A C G C T A C A T G G C T A A G T C C G A T A C T G A G T C A G T C
p-value:1e-13
log p-value:-3.071e+01
Information Content per bp:1.664
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif347.4
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets44.2 +/- 27.2bp
Average Position of motif in Background52.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGWCWGCCAG
TGGCAGNCTGCCAG
 A C G T C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGWCWGCCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGCAGWCWGCCAG
TGGCACCATGCCAA
 A C G T C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCAGWCWGCCAG
GSCTGTCACTCA-
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGWCWGCCAG
TNNGGGCAG--------
 A C G T A C G T A C G T A C G T C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GGCAGWCWGCCAG
-------TGCCAA
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGCAGWCWGCCAG--
--CTGTCTGTCACCT
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCAGWCWGCCAG--
---TGTCTGDCACCT
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAGWCWGCCAG
-NCTGTCAATCAN
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAGWCWGCCAG
-SCTGTCAVTCAV
 C T A G A C T G T G A C G C T A T C A G C G A T G T A C C G A T A C T G A G T C G T A C T G C A T C A G
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A