Information for 19-CCCAAGCTTGGSA (Motif 22)

A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A
Reverse Opposite:
C G A T A T G C T A G C A G T C C G T A C T G A A T C G A G T C G C A T G A C T A T C G A T C G A C T G
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.785
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif19.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.3 +/- 22.6bp
Average Position of motif in Background48.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA
---AAGCTTG---
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A
A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA--
-----NNTTGGCANN
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA--
------NTTGGCANN
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA-
------CTTGGCAA
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CCCAAGCTTGGSA
-------TTGGCA
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA----
-NGTAGGTTGGCATNNN
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCCAAGCTTGGSA-
-----GGTTGGCAT
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCCAAGCTTGGSA
ATGCCCGGGCATGT--
 A C G T A C G T A C G T A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCCAAGCTTGGSA--
GTCATGCHTGRCTGS
 A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCCAAGCTTGGSA
GGCACCCAGGGGTGC--
 A C G T A C G T A C G T A C G T A G T C A T G C A T G C C G T A C G T A A C T G A T G C A G C T A C G T A C T G A T C G A T C G C G T A
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C A C G T A C G T