Information for 2-GGTTGCCATGGCA (Motif 2)

C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A
Reverse Opposite:
G C A T C T A G A G T C G A T C G C T A C A G T C T A G T A C G G T A C T C G A T C G A G A T C G T A C
p-value:1e-17
log p-value:-4.035e+01
Information Content per bp:1.632
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.82%
Number of Background Sequences with motif417.8
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets51.1 +/- 24.9bp
Average Position of motif in Background50.1 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCA-
NGTTGCCATGGCAA
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCA-
GGTTGCCATGGCAA
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGCA--
-GTTGCCATGGNAAC
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCA--
KGTTGCCATGGCAAC
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGCA--
CGGTTGCCATGGCAAC
 A C G T C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCA---
NGTTGCCATGGCAACG
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCA---
CGTTGCCATGGCAACG
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCA---
CGTTGCCATGGCAACN
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCA---
CGTTGCCATGGCAACN
 C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATGGCA
NNCGTTGCTATGGNN
 A C G T A C G T C A T G C A T G A G C T A C G T C A T G A G T C G A T C G T C A C G A T C T A G T C A G G A T C C G T A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A