Information for 5-GATCAGATTGSCC (Motif 3)

C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G T A G C G T A C C G T A C G T A A C G T G T A C C G A T A C T G C G T A A C G T G T A C
p-value:1e-13
log p-value:-3.202e+01
Information Content per bp:1.810
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.4 +/- 15.5bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0105.1_Arid3a_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GATCAGATTGSCC
ACCCGTATCAAATTT---
 A C G T A C G T A C G T A C G T A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GATCAGATTGSCC
---CCGATTGGCT
 C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATCAGATTGSCC
GKVTCADRTTWC--
 A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GATCAGATTGSCC-----
---CTGATTGGTCNATTT
 C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATCAGATTGSCC
GKMTCADRTTWC--
 A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GATCAGATTGSCC--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GATCAGATTGSCC
TAATCHGATTAC--
 A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GATCAGATTGSCC
TAATYNRATTAR--
 A C G T C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GATCAGATTGSCC
-AACAGATGGC--
 C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GATCAGATTGSCC
---TTGATTGN--
 C A T G C G T A A C G T A G T C C G T A A C T G C G T A A C G T C G A T A C T G A T C G A T G C A G T C
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T