Information for 10-CAGAATTCTGCCA (Motif 12)

A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A
Reverse Opposite:
A C G T A C T G A T C G A T G C C G T A A T C G T C G A C G T A A C G T A C G T T A G C C G A T A T C G
p-value:1e-9
log p-value:-2.120e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif44.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets50.4 +/- 27.8bp
Average Position of motif in Background46.7 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CAGAATTCTGCCA--
-------TTGCCAAG
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0145.1_Mafb_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGAATTCTGCCA---
-ANATTTTTGCAANTN
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:3
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAGAATTCTGCCA--
ANTTMRCASBNNNGTGYKAAN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CAGAATTCTGCCA---
------GGTGCCAAGT
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAGAATTCTGCCA-
---NATTGTGCAAT
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T
A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CAGAATTCTGCCA--
------CGTGCCAAG
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGAATTCTGCCA-
----GGTCTGGCAT
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CAGAATTCTGCCA-
--------TGCCAA
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAGAATTCTGCCA---
-RGSMTBCTGGGAAAT
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T A C G T A C G T
A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CAGAATTCTGCCA-
------GCTGTCAA
 A T G C C G T A A C T G T C G A T C G A C G A T A G C T A T G C A C G T A T C G T A G C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A