Information for 5-TCTGGTGCCA (Motif 2)

A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C C T G A A T G C A G T C C T G A A C T G C G T A
p-value:1e-12
log p-value:-2.957e+01
Information Content per bp:1.925
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif66.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets29.2 +/- 19.4bp
Average Position of motif in Background47.7 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TCTGGTGCCA--
---CGTGCCAAG
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCTGGTGCCA---
---GGTGCCAAGT
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:TCTGGTGCCA-
-----TGCCAA
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCTGGTGCCA---
----ATGCCAACC
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

E2F1/MA0024.3/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCTGGTGCCA--
TTTGGCGCCAAA
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TCTGGTGCCA--
----TTGCCAAG
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCTGGTGCCA-----
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCTGGTGCCA-----
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCTGGTGCCA-------
-ACTATGCCAACCTACC
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCTGGTGCCA
--AGGTGTCA
 A C G T A G T C A G C T A C T G A T C G A G C T A C T G A G T C A G T C C G T A
A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A