Information for 5-GSTGGCYATYASAGGA (Motif 7)

A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A
Reverse Opposite:
A C G T A G T C A G T C A C G T A T G C A G C T C T G A C T G A C G A T C T A G A C T G A G T C A G T C C G T A A T G C G T A C
p-value:1e-13
log p-value:-3.204e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.7 +/- 20.1bp
Average Position of motif in Background25.3 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA
---GGCCATTAAC---
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA--
---GGTCANYTGAGGWCA
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GSTGGCYATYASAGGA
---GNCTATAAAAGG-
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GSTGGCYATYASAGGA------
--TGGCCANNNNNGGAACTGCA
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA-----
--TGGCCACCAGGGGGCGCTA
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.52
Offset:10
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA-
----------AGAGGAA
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GSTGGCYATYASAGGA------
--TGGCCACCAGGTGGCACTNT
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA---
---------AACAGGAAGT
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GSTGGCYATYASAGGA
----BCMATTAG----
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GSTGGCYATYASAGGA
----GCAATTAG----
 A C T G A T C G A C G T A C T G A C T G A G T C A G T C C G T A G A C T A G C T C T G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T