Information for 4-SCCTCCTGTGKTCACA (Motif 5)

A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T A G C G T A G T A C A T G C C G T A A G T C C G T A C T A G A T C G C T G A C T A G C T A G A T G C
p-value:1e-16
log p-value:-3.687e+01
Information Content per bp:1.786
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 11.9bp
Average Position of motif in Background56.5 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:SCCTCCTGTGKTCACA
----GCTGTGGTTT--
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:SCCTCCTGTGKTCACA--
-NNNVCTGWGYAAACASN
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A A C G T A C G T
A C G T A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:SCCTCCTGTGKTCACA
-----CTGTGGTTTN-
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:SCCTCCTGTGKTCACA
---GTCTGTGGTTT--
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:SCCTCCTGTGKTCACA
ACTTCCTGTT------
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:SCCTCCTGTGKTCACA
---NNHTGTGGTTWN-
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:SCCTCCTGTGKTCACA----
---NTNTATGTGCACATNNN
 A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--SCCTCCTGTGKTCACA
CCCCCTGCTGTG------
 A C G T A C G T A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--SCCTCCTGTGKTCACA
NNTCCTGCTGTGNNN---
 A C G T A C G T A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-SCCTCCTGTGKTCACA
CACTTCCTGT-------
 A C G T A T C G A G T C A G T C A G C T A T G C A G T C A C G T C T A G C G A T A T C G A C T G C G A T A G T C C G T A G T A C C G T A
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T