Information for 14-AGAGTTTAAT (Motif 44)

T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T
Reverse Opposite:
C T G A G C A T C G A T T C G A C T G A C T G A T G A C C G A T T G A C A C G T
p-value:1e-1
log p-value:-3.806e+00
Information Content per bp:1.688
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif109.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets34.7 +/- 23.8bp
Average Position of motif in Background53.6 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:AGAGTTTAAT
----TTTAAT
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AGAGTTTAAT----
----TTTAATTGCN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGAGTTTAAT
TATTGTTTATT
 A C G T T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGTTTAAT---
--ATATTAATTAA
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAGTTTAAT------
NGANTTTTATGGCTCN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

GSX2/MA0893.1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AGAGTTTAAT----
----NTTAATTAGN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGAGTTTAAT------
NNANTTTTATTGGNNN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AGAGTTTAAT---
---TTTTTATTGC
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGAGTTTAAT-------
NNNTTTTAATTAANNNN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGAGTTTAAT----
----TTTTATTRGN
 T G C A A C T G G C T A A C T G G A C T G A C T A G C T G C T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A