Information for 3-TTCTCCCAATTAAATC (Motif 4)

G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G G T C A A C G T A C G T A G C T T C G A C G T A A G C T A C G T A C T G A C T G A C T G C G T A C T A G C G T A C G T A
p-value:1e-12
log p-value:-2.789e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 27.0bp
Average Position of motif in Background46.0 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC--
--AACCCAATAAAATTCG
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
----NGCAATTAAA--
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC--
--CTACCAATAAAATTCT
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
-----CCAATAAAAC-
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTCTCCCAATTAAATC
----CCYMATAAAA--
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
-----CCAATAAAAA-
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
-----CCAATTAA---
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.60
Offset:8
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
--------ATTAAA--
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
----NCYAATAAAA--
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTCTCCCAATTAAATC
----ACTAATTAAA--
 G C A T C G A T A G T C C G A T A G T C A G T C G T A C C G T A C T G A A C G T A G C T C T G A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T