Information for 16-CCAGAAWTCAAGA (Motif 31)

A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C C G A T A G C T A T C G C G T A C G A T A C G T A C G T A T G C C G A T A C T G C T A G
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.773
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.9 +/- 26.9bp
Average Position of motif in Background54.9 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAWTCAAGA
GGCCATAAATCA---
 A C G T A C G T A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGAAWTCAAGA
GCCATAAATCA---
 A C G T A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGAAWTCAAGA
--AAAAGTCAA--
 A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAWTCAAGA
GGCCATAAATCAC--
 A C G T A C G T A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAWTCAAGA
GGCCATAAATCA---
 A C G T A C G T A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAGAAWTCAAGA----
---ACATTCATGACACG
 A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGAAWTCAAGA--
-AAAAAATCAATAAT
 A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCAGAAWTCAAGA
TCATCAATCA---
 A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCAGAAWTCAAGA--
-AAAAAATCGATAAT
 A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A A C G T A C G T
A C G T T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAAWTCAAGA
ATGCCAGACN------
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A G T C A C G A T A C G T A T G C C T G A C G T A A C T G C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T