Information for 5-GCMCCAAAGAAAA (Motif 15)

T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A
Reverse Opposite:
A G C T A C G T A G C T A C G T G T A C A C G T A C G T A G C T A C T G A C T G A C G T A T C G A T G C
p-value:1e-10
log p-value:-2.428e+01
Information Content per bp:1.838
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif20.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets66.6 +/- 24.3bp
Average Position of motif in Background52.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCMCCAAAGAAAA----
-AACCCAATAAAATTCG
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCMCCAAAGAAAA
---CCYMATAAAA
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A
A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCMCCAAAGAAAA----
GTTCAAAAAAAAAATTC
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCMCCAAAGAAAA-
----CCAATAAAAC
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCMCCAAAGAAAA-
----CCAATAAAAA
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCMCCAAAGAAAA--
AGCCGAAAAAAAAAT
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCMCCAAAGAAAA-
----CCAATAAAAA
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCMCCAAAGAAAA----
-CTACCAATAAAATTCT
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PB0093.1_Zfp105_1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCMCCAAAGAAAA----
--AACAAACAACAAGAG
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCMCCAAAGAAAA----
-TGCCAAAATAAACANN
 T A C G A T G C G T C A A G T C A G T C C T G A C G T A G T C A C A T G C G T A C T G A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A