Information for 1-GATTAGNAGGCAAAGC (Motif 1)

C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T A G C T A C G T A T C G A G T C G A T C A C G T T C G A A T G C G C A T C G T A C G T A A G C T G A T C
p-value:1e-13
log p-value:-3.203e+01
Information Content per bp:1.728
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.7 +/- 27.5bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GATTAGNAGGCAAAGC
-ATTTGCATACAATGG
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

FOXP1/MA0481.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GATTAGNAGGCAAAGC
CAAAAGTAAACAAAG-
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GATTAGNAGGCAAAGC
------AAAACAAAGG
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GATTAGNAGGCAAAGC---
---AAACAGACAAAGGAAT
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0015.1_Foxa2_1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GATTAGNAGGCAAAGC-
AAAAAGTAAACAAAGAC
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GATTAGNAGGCAAAGC
----AGAAACGAAAGT
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T A C G T A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:GATTAGNAGGCAAAGC
---------ACAAAG-
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GATTAGNAGGCAAAGC
TNTAATTTGCATACNA---
 A C G T A C G T A C G T C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GATTAGNAGGCAAAGC
TNTAATTTGCATACNA---
 A C G T A C G T A C G T C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GATTAGNAGGCAAAGC
CATTGTTATGCAAAT-
 C A T G C T G A C G A T C G A T C G T A A T C G A C G T C G T A C A T G T A C G A T G C C G T A C T G A C G T A A C T G G T A C
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T