Information for 2-CCCBAGAAAGCACTCA (Motif 4)

T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
Reverse Opposite:
A C G T A T C G T C G A A T C G C G A T A C T G G A T C A G C T A C G T A G C T A G T C A C G T T C A G A C T G C A T G A C T G
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.697
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.9 +/- 25.2bp
Average Position of motif in Background46.5 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.64
Offset:7
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA--
-------AGCCACTCAAG
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.63
Offset:7
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA-
-------AAGCACTTAA
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA-
-------AASCACTCAA
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA
-----CAAATCACTG-
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:CCCBAGAAAGCACTCA-
-------MRSCACTYAA
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

BCL6B/MA0731.1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CCCBAGAAAGCACTCA
TGAATTCCTAGAAAGCA----
 A C G T A C G T A C G T A C G T A C G T T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA-
AAGGCGAAATCATCGCA
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA
-GCCATAAATCA----
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA
GGCCATAAATCAC---
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCCBAGAAAGCACTCA
--ACTGAAACCA----
 T G A C G A T C G T A C A G T C G T C A C T A G C T G A C G T A T C G A C A T G A G T C G C T A A T G C A C G T T A G C G T C A
A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T