Information for 1-GGGAGTTTGC (Motif 3)

A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
Reverse Opposite:
T C A G T G A C C G T A T C G A T C G A G A T C G A C T A T G C T A G C T A G C
p-value:1e-11
log p-value:-2.652e+01
Information Content per bp:1.650
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif8.35%
Number of Background Sequences with motif1618.7
Percentage of Background Sequences with motif3.41%
Average Position of motif in Targets46.7 +/- 25.2bp
Average Position of motif in Background51.3 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGGAGTTTGC
GGGAATTTCC
 A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGAGTTTGC
GGGAATTTCC
 A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGGAGTTTGC
GGGGATTTCC
 A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTTGC-
NGGGGATTTCCC
 A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGGAGTTTGC
GGGGATTTCC
 A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

PB0149.1_Myb_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGAGTTTGC--
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGTTTGC
TGGCAGTTGN-
 A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGGAGTTTGC--
CACGGCAGTTGGTNN
 A C G T A C G T A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTTGC
TGGCAGTTGG-
 A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGAGTTTGC--
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A C G T A C G T A T C G A T C G T A C G C T G A C T A G A G C T A G C T G C A T A C T G A G T C A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T