Information for 4-ARTCCTAAKT (Motif 3)

C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A G T C A A C G T G C A T C G T A A C T G A C T G C G T A A G T C A C G T
p-value:1e-13
log p-value:-3.012e+01
Information Content per bp:1.903
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 26.2bp
Average Position of motif in Background42.5 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VSX2/MA0726.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:ARTCCTAAKT--
----CTAATTAG
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ARTCCTAAKT-
---NCTAATTA
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ARTCCTAAKT------
ACTCCTAATTAGTCGT
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

EN1/MA0027.2/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:ARTCCTAAKT--
----CTAATTAG
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

GBX2/MA0890.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ARTCCTAAKT---
---NNTAATTGNN
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T

LBX2/MA0699.1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ARTCCTAAKT---
---NNTAATTGGN
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C

VSX1/MA0725.1/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ARTCCTAAKT--
----CTAATTAT
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

PH0133.1_Pax7/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ARTCCTAAKT------
NNNTNCTAATTAGNTCN
 A C G T C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G T C A A C T G C G A T T G C A G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T C G A T A T G C C A T G

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:ARTCCTAAKT--
----CTAATTAG
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

EMX2/MA0886.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:ARTCCTAAKT---
---NCTAATTANN
 C G T A C T A G A C G T A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C