Information for 2-RTTWGACATGATCTAG (Motif 4)

C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
Reverse Opposite:
A G T C A G C T C T G A A C T G T G C A G A C T G T A C C G T A A C G T A C T G A C G T A G T C G C T A C T G A C G T A G A T C
p-value:1e-14
log p-value:-3.238e+01
Information Content per bp:1.721
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.1 +/- 21.8bp
Average Position of motif in Background40.4 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

JUN/MA0488.1/Jaspar

Match Rank:1
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RTTWGACATGATCTAG
--ATGACATCATCNN-
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
A C G T A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RTTWGACATGATCTAG
--TTGACAG-------
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---RTTWGACATGATCTAG
NNAATTAGTCACGGT----
 A C G T A C G T A C G T C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T A C G T A C G T A C G T A C G T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RTTWGACATGATCTAG----
NDBAGATRWTATCTVNNNNN
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G A C G T A C G T A C G T A C G T
C G T A C A G T A T G C C G T A A C T G C G T A A C G T T C G A G C T A G A C T C G T A A C G T A G T C C G A T T A C G G C A T A G C T G A T C G A C T G A C T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:RTTWGACATGATCTAG--
---TGACANARRCCAGRC
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RTTWGACATGATCTAG
--TTGACAGG------
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:RTTWGACATGATCTAG--
---TATCATAATTAAGGA
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G A C G T A C G T
A C G T A C G T A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:RTTWGACATGATCTAG-----
----GANGTTAACTAGTTTNN
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:RTTWGACATGATCTAG
------YSTTATCT--
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:RTTWGACATGATCTAG--------
-------NNGATCTAGAACCTNNN
 C T A G A C G T G A C T C G A T C T A G G T C A A G T C G T C A C G A T A C T G C T G A A C G T G T A C A G C T C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G