Information for 2-AGACACGGAT (Motif 14)

C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
Reverse Opposite:
C T G A A C G T A G T C G T A C C T A G A C G T A C T G A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.872
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.8 +/- 18.8bp
Average Position of motif in Background55.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACACGGAT
CCAGACRSVB--
 A C G T A C G T C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGACACGGAT
CCAGACAG----
 A C G T A C G T C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACACGGAT
BCAGACWA----
 A C G T A C G T C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGACACGGAT---
--ACCCGGATGTA
 C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T A C G T A C G T A C G T
A C G T A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AGACACGGAT
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGACACGGAT
AGTCACGC--
 C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGACACGGAT
TBGCACGCAA
 C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0077.1_Spdef_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACACGGAT----
AANNATCCGGATGTNN
 A C G T A C G T C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T A C G T A C G T A C G T A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGACACGGAT-----
AAAAACGGATTATTG
 C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGACACGGAT
--GCACGTAY
 C G T A C T A G C G T A A G T C C G T A A G T C A C T G C T A G G T C A A G C T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T