Information for 2-RGCGCCMYCTGCTGGC (Motif 3)

C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
Reverse Opposite:
A C T G A G T C A G T C C G T A A T C G A G T C C T G A C T A G C T A G C A G T C A T G T A C G G T A C C T A G T A G C G A T C
p-value:1e-41
log p-value:-9.626e+01
Information Content per bp:1.653
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif77.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets60.2 +/- 26.1bp
Average Position of motif in Background57.2 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-RGCGCCMYCTGCTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----RGCGCCMYCTGCTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RGCGCCMYCTGCTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:RGCGCCMYCTGCTGGC
----CCCCCTGCTGTG
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC-
--GGCCYCCTGCTGDGH
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC
---GCCATCTGTT---
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC
---ACCATCTGTT---
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC-
--GACCCCCCGCTGTGC
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC
--SNGCACCTGCHS--
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RGCGCCMYCTGCTGGC
--GACCCCCCGCTGTG
 C T A G A T C G G A T C C A T G A T G C G A T C G T C A A G T C A G T C G A C T T C A G T A G C C G A T A C T G A C T G T G A C
A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G