Information for 8-GAATGGCTAA (Motif 6)

C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A
Reverse Opposite:
G A C T G A C T C T G A A C T G A T G C G T A C C T G A G C A T G C A T G T A C
p-value:1e-12
log p-value:-2.970e+01
Information Content per bp:1.666
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif292.3
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets56.7 +/- 24.2bp
Average Position of motif in Background51.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGCTAA-
TGATTGGCTANN
 A C G T C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAATGGCTAA--
--ATGAATATTC
 C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Barhl1/MA0877.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAATGGCTAA-----
-----GCTAATTGCT
 C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAATGGCTAA
GTTAATGGCC--
 A C G T A C G T C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAATGGCTAA----
AAAATATGCATAATAAA
 A C G T A C G T A C G T C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAATGGCTAA--
--ATGMATATDC
 C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAATGGCTAA----
ACCGTGACTAATTNN
 A C G T C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAATGGCTAA----
--ATGCATAATTCA
 C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GAATGGCTAA----
------CTAATKGV
 C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BATF::JUN/MA0462.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAATGGCTAA
GAAATGACTCA
 A C G T C A T G C G T A C G T A G A C T C A T G T A C G T G A C G A C T C T G A C T G A
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A