Information for 11-GCAGAGATCCAAC (Motif 22)

A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
Reverse Opposite:
A C T G A C G T A C G T A C T G A C T G G T C A A C G T A G T C A C G T G T A C A C G T A C T G G T A C
p-value:1e-8
log p-value:-1.968e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.8 +/- 18.3bp
Average Position of motif in Background74.4 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGATCCAAC
TGGCACCATGCCAA-
 A C G T A C G T A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCAGAGATCCAAC
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAGAGATCCAAC-
--AAAGATCAAAGG
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C A C G T
A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAGAGATCCAAC----
--AAAGATCAAAGGGTT
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGAGATCCAAC
GCAGTGATTT---
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAGAGATCCAAC
TGGCAGNCTGCCAG-
 A C G T A C G T A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCAGAGATCCAAC-----
-NANAGATCAAAGGGNNN
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCAGAGATCCAAC-----
-NNNAGATCAAAGGANNN
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GCAGAGATCCAAC
------TGCCAA-
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCAGAGATCCAAC
---ATAATCCC--
 A C T G A G T C C G T A C A T G C G T A A C T G C G T A A C G T A G T C A G T C C G T A C G T A G T A C
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T