Information for 5-RAGAATTTKWWGSCTS (Motif 5)

C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
Reverse Opposite:
A T G C C G T A C A T G A T C G A G T C C G T A C G A T G T C A C G T A C G T A C G T A A C G T A C G T A G T C C G A T A G C T
p-value:1e-11
log p-value:-2.685e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.3 +/- 19.8bp
Average Position of motif in Background48.6 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS-
-NGANTTTTATGGCTCN
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G A C G T
A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS-
ANTAATTTTATGGCCGN
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----RAGAATTTKWWGSCTS
TNCNNAACAATTTTTNC----
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----RAGAATTTKWWGSCTS
NNCNNAACAATTNT-------
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS
-----TTTTATGGCTN
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

TEAD4/MA0809.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RAGAATTTKWWGSCTS
NTGGAATGTN-------
 A C G T C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
C T G A G C A T C T A G T C A G G C T A C G T A G C A T A C T G G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS--
--NAATTTTATTACCNNN
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G A C G T A C G T
A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS
----NTTTTATGAC--
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RAGAATTTKWWGSCTS-
-TNAATTTTATTACCTN
 C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G A C G T
A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----RAGAATTTKWWGSCTS
TTAAGAACAATAAATT-----
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G G T C A C G T A A C G T A C G T A C G T C A G T C G T A C G A T A C T G A T G C G A T C A C G T T A C G
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T