Information for 9-TGCTGCGTTCGCTGCG (Motif 25)

A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
Reverse Opposite:
A T G C A T C G A G T C C T G A A C T G A G T C A C T G G T C A G C T A A G T C A C T G A G T C C G T A A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.926e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 28.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGCGTTCGCTGCG
NNTCCTGCTGTGNNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGCGTTCGCTGCG
TCNCCTGCTGNGNNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGCGTTCGCTGCG
TNTCCTGCTGTGNNG------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGCTGCGTTCGCTGCG
--NCGCGGACGTTG--
 A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
A C G T A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:5
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------TGCTGCGTTCGCTGCG
NAAAANTGCTGACTCAGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
C G T A C T G A C G T A C G T A C G T A G C A T G C A T C T A G G T A C C G A T A C T G C G T A A T G C G C A T G A T C C G T A C A T G T A G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTGCGTTCGCTGCG
CCCCCTGCTGTG---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCTGCGTTCGCTGCG
CCTGCTGAGH--------
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGCTGCGTTCGCTGCG
-GCTGTG---------
 A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TGCTGCGTTCGCTGCG
-GCTCCG---------
 A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.50
Offset:-7
Orientation:forward strand
Alignment:-------TGCTGCGTTCGCTGCG
GGCCYCCTGCTGDGH--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C T G C A G T A C G T A G T C A C T G A G T C A G C T A C T G A T G C A T C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T