Information for 10-GCAAAGCAAC (Motif 19)

T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C
Reverse Opposite:
A T C G A G C T C A G T A C T G A G T C A C G T C G A T C G A T A C T G A G T C
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.836
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif124.0
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets45.2 +/- 26.3bp
Average Position of motif in Background52.2 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGCAAC---
CCGCATAGCAACGGA
 A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGCAAC---
TACCATAGCAACGGT
 A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAAAGCAAC--
SCCTAGCAACAG
 T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------GCAAAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGCAAC-
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGCAAC---
ATATCAAAACAAAACA
 A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGCAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GCAAAGCAAC-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGCAAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T T C A G G T A C C G T A C G T A G T C A A C T G A G T C G T C A C T G A T A G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C