Information for 17-CMCAGCYSGCACS (Motif 25)

A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
Reverse Opposite:
A T G C A C T G A C G T A C T G A G T C T A C G C T A G A C T G A G T C A C G T A C T G A C G T A C T G
p-value:1e-5
log p-value:-1.165e+01
Information Content per bp:1.879
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.8 +/- 24.9bp
Average Position of motif in Background59.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CMCAGCYSGCACS
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CMCAGCYSGCACS
DCTCAGCAGG----
 A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CMCAGCYSGCACS
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CMCAGCYSGCACS
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CMCAGCYSGCACS-
DCHCAGCAGGRGGCC
 A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CMCAGCYSGCACS
CACAGN-------
 A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CMCAGCYSGCACS
NAACAGCTGG----
 A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CMCAGCYSGCACS
CACAGCAGGGGG-
 A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CMCAGCYSGCACS
NAHCAGCTGD----
 A C G T A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CMCAGCYSGCACS
--CAGCC------
 A G T C G T C A A G T C C G T A A C T G A G T C A G T C A T G C A C T G A G T C C G T A A G T C A T C G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T